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I ran a short simulation to see if everything stayed together. For the most part it did. There were about a dozen molecules that few apart; I assume from being in a too energetic position. I played around with moving them around, but it was just a lot easier to delete them, so we are playing with 12-14 less specimens. The above arrangement is what I am going with for the long sort sim. It is going to take a while, but I'll try to come up with some stuff to entertain you while we are waiting.
MTF
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