Machine Phase

Install necessary packages: sudo apt-get install cmake sudo apt-get install build-essential sudo apt-get install libboost-dev l...

Quick MD simulation done in SIESTA and visualized in VMD. I have a back log of stuff to post, but I might move on to the new stuff.

Small molecular dynamics simulation carried out in GROMACS and visualized in Blender as part of a larger project I'm still working on.

The version numbers could be a little nuts here for a while. I probably won't post anything else until they get into double digits as I ...

Reading in xyz coordinates and rendering them in PyOpenGl I figure by the time I'm done it will be best-in-class, export controlled and ...

Atom colors change as a function of their velocity using the basic how-hard-is-it-raining convention, slower is blue, white is pouring. RGB ...

I obviously have a small glitch in importing these models from NE1 to Blender in that I lose a single atom. I bet it is either the first or ...