Install necessary packages:
sudo apt-get install cmake
sudo apt-get install build-essential
sudo apt-get install libboost-dev libxml2-dev
sudo apt-get install libfftw3-dev libfftw3-doc
1. download gromacs source gromacs-5.0.4.tgz
2. cd ~/Downloads
3. tar -xvzf gromacs-5.0.4.tgz
4. mkdir build
5. cd build
6. sudo cmake ..
-DCMAKE_C_COMPILER=/usr/bin/gcc -DCMAKE_CXX_COMPILER=/usr/bin/g++ -DGMX_BUILD_OWN_FFTW=ON
7. sudo make
8. sudo make install